Package: omu 1.1.0

omu: A Metabolomics Analysis Tool for Intuitive Figures and Convenient Metadata Collection

Facilitates the creation of intuitive figures to describe metabolomics data by utilizing Kyoto Encyclopedia of Genes and Genomes (KEGG) hierarchy data, and gathers functional orthology and gene data from the KEGG-REST API.

Authors:Connor Tiffany [aut, cre]

omu_1.1.0.tar.gz
omu_1.1.0.zip(r-4.5)omu_1.1.0.zip(r-4.4)omu_1.1.0.zip(r-4.3)
omu_1.1.0.tgz(r-4.4-any)omu_1.1.0.tgz(r-4.3-any)
omu_1.1.0.tar.gz(r-4.5-noble)omu_1.1.0.tar.gz(r-4.4-noble)
omu_1.1.0.tgz(r-4.4-emscripten)omu_1.1.0.tgz(r-4.3-emscripten)
omu.pdf |omu.html✨
omu/json (API)

Peer review:

Bug tracker:https://github.com/connor-reid-tiffany/omu/issues

On CRAN:

23 exports 3 stars 1.97 score 111 dependencies 5 mentions 49 scripts 346 downloads

Last updated 11 months agofrom:556731e5f7. Checks:OK: 7. Indexed: yes.

Exports:assign_hierarchycheck_zeroscount_fold_changesget_seqsKEGG_gathermake_omeletteomu_anovaomu_summaryPCA_plotpie_chartplate_omeletteplate_omelette_rxnkoplot_barplot_boxplotplot_heatmapplot_rf_PCAplot_variable_importanceplot_volcanora_tablerandom_forestread_metabotransform_metabolitestransform_samples

Dependencies:abindaskpassbackportsbootbroomcarcarDatacaretclasscliclockcodetoolscolorspacecorrplotcowplotcpp11curldata.tableDerivdiagramdigestdoBydplyrdunn.teste1071fansifarverforeachFSAfuturefuture.applygenericsggfortifyggplot2globalsgluegowergridExtragtablehardhathttripredisobanditeratorsjsonliteKernSmoothlabelinglatticelavalifecyclelistenvlme4lmtestlubridatemagrittrMASSMatrixMatrixModelsmgcvmicrobenchmarkmimeminqaModelMetricsmodelrmunsellnlmenloptrnnetnumDerivopensslparallellypbkrtestpillarpkgconfigplotrixplyrpROCprodlimprogressrproxypurrrquantregR6randomForestRColorBrewerRcppRcppEigenrecipesreshape2rlangrpartrstatixscalesshapeSparseMSQUAREMstringistringrsurvivalsystibbletidyrtidyselecttimechangetimeDatetzdbutf8vctrsviridisLitewithrzoo